bmtk.utils.converters.sonata package

Submodules

bmtk.utils.converters.sonata.edge_converters module

bmtk.utils.converters.sonata.edge_converters.convert_edges(edges_file, edge_types_file, **params)[source]
bmtk.utils.converters.sonata.edge_converters.create_index(node_ids_ds, output_grp, index_type=0)[source]
bmtk.utils.converters.sonata.edge_converters.edges_csv2h5(edges_file, edge_types_file, src_network, src_nodes, src_node_types, trg_network, trg_nodes, trg_node_types, output_dir='network', src_label='location', trg_label='pop_name')[source]

Used to convert oldest (isee engine) edges files

Parameters
  • edges_file

  • edge_types_file

  • src_network

  • src_nodes

  • src_node_types

  • trg_network

  • trg_nodes

  • trg_node_types

  • output_dir

  • src_label

  • trg_label

bmtk.utils.converters.sonata.edge_converters.update_aibs_edges(edges_file, edge_types_file, trg_network, src_network, population_name=None, output_dir='output')[source]
bmtk.utils.converters.sonata.edge_converters.update_edge_types_file(edge_types_file, src_network=None, trg_network=None, output_dir='network')[source]
bmtk.utils.converters.sonata.edge_converters.update_h5_edges(edges_file, edge_types_file, src_network=None, population_name=None, trg_network=None, output_dir='network')[source]

bmtk.utils.converters.sonata.node_converters module

bmtk.utils.converters.sonata.node_converters.convert_nodes(nodes_file, node_types_file, **params)[source]
bmtk.utils.converters.sonata.node_converters.update_csv_nodes(nodes_file, node_types_file, network_name, output_dir='network', column_order=('node_type_id', 'model_type', 'model_template', 'model_processing', 'dynamics_params', 'morphology'))[source]
bmtk.utils.converters.sonata.node_converters.update_h5_nodes(nodes_file, node_types_file, network_name, output_dir='output', column_order=('node_type_id', 'model_type', 'model_template', 'model_processing', 'dynamics_params', 'morphology'))[source]

Module contents