Source code for bmtk.simulator.filternet.modules.record_rates
import os
import csv
from .base import SimModule
[docs]class RecordRates(SimModule):
def __init__(self, csv_file=None, h5_file=None, tmp_dir='output'):
csv_file = csv_file if csv_file is None or os.path.isabs(csv_file) else os.path.join(tmp_dir, csv_file)
self._save_to_csv = csv_file is not None
self._tmp_csv_file = csv_file if self._save_to_csv else os.path.join(tmp_dir, '__tmp_rates.csv')
self._tmp_csv_fhandle = open(self._tmp_csv_file, 'w')
self._tmp_csv_writer = csv.writer(self._tmp_csv_fhandle, delimiter=' ')
self._save_to_h5 = h5_file is not None
[docs] def save(self, sim, cell, times, rates):
for t, r in zip(times, rates):
self._tmp_csv_writer.writerow([cell.gid, t, r])
self._tmp_csv_fhandle.flush()
[docs] def finalize(self, sim):
if self._save_to_h5:
raise NotImplementedError
self._tmp_csv_fhandle.close()
if not self._save_to_csv:
os.remove(self._tmp_csv_file)