Source code for bmtk.simulator.filternet.modules.record_rates

import os
import csv

from .base import SimModule


[docs]class RecordRates(SimModule): def __init__(self, csv_file=None, h5_file=None, tmp_dir='output'): csv_file = csv_file if csv_file is None or os.path.isabs(csv_file) else os.path.join(tmp_dir, csv_file) self._save_to_csv = csv_file is not None self._tmp_csv_file = csv_file if self._save_to_csv else os.path.join(tmp_dir, '__tmp_rates.csv') self._tmp_csv_fhandle = open(self._tmp_csv_file, 'w') self._tmp_csv_writer = csv.writer(self._tmp_csv_fhandle, delimiter=' ') self._save_to_h5 = h5_file is not None
[docs] def save(self, sim, cell, times, rates): for t, r in zip(times, rates): self._tmp_csv_writer.writerow([cell.gid, t, r]) self._tmp_csv_fhandle.flush()
[docs] def finalize(self, sim): if self._save_to_h5: raise NotImplementedError self._tmp_csv_fhandle.close() if not self._save_to_csv: os.remove(self._tmp_csv_file)